{
  "_id": "6ad0a040576abc75bd5cde69",
  "Package": "cureAssess",
  "Type": "Package",
  "Title": "Assessing Cure Model Appropriateness for Survival Data",
  "Version": "0.1.0",
  "Authors@R": "c(\nperson(\ngiven = \"Geethanjalee\",\nfamily = \"Mudunkotuwa\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"geethanjaleem@gmail.com\"\n),\nperson(\ngiven = \"Durbadal\",\nfamily = \"Ghosh\",\nrole = \"aut\",\nemail = \"reevu7@gmail.com\"\n))",
  "Description": "Assesses whether cure models are appropriate for\nright-censored survival data, where a fraction of subjects may\nnever experience the event of interest. Implements a two-stage\nworkflow combining Kaplan-Meier visualization and comparison of\nparametric cure and non-cure models by the Akaike information\ncriterion with formal diagnostics for sufficient follow-up and\nfor the presence of a cured fraction. The diagnostics include\nthe statistics of Maller and Zhou (1992)\n<doi:10.1093/biomet/79.4.731> and Maller and Zhou (1994)\n<doi:10.1080/01621459.1994.10476889>, the test of Shen (2000)\n<doi:10.1016/S0167-7152(00)00063-8>, and the ratio estimation\nof censored uncured subjects ('RECeUS') method of Selukar and\nOthus (2023) <doi:10.1002/sim.9610>.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/GeethanjaleeM/cureAssess",
  "BugReports": "https://github.com/GeethanjaleeM/cureAssess/issues",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "Roxygen": "list(markdown = TRUE)",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "Config/roxygen2/version": "8.1.0",
  "Config/pak/sysreqs": "cmake make libicu-dev libjpeg-dev libpng-dev\nlibxml2-dev libssl-dev",
  "Repository": "https://geethanjaleem.r-universe.dev",
  "Date/Publication": "2026-09-02 19:54:23 UTC",
  "RemoteUrl": "https://github.com/geethanjaleem/cureassess",
  "RemoteRef": "HEAD",
  "RemoteSha": "1d37cf0148ce5e5131a07753499856bd24cbadd0",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-15 09:38:12 UTC",
    "User": "root"
  },
  "Author": "Geethanjalee Mudunkotuwa [aut, cre, cph],\nDurbadal Ghosh [aut]",
  "Maintainer": "Geethanjalee Mudunkotuwa <geethanjaleem@gmail.com>",
  "_user": "geethanjaleem",
  "_type": "src",
  "_file": "cureAssess_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/860460638e774fec205844058352c221338bebede9797eda100b20496a22469b",
  "_filesize": 327649,
  "_sha256": "860460638e774fec205844058352c221338bebede9797eda100b20496a22469b",
  "_expires": "2027-01-23T09:43:25.000Z",
  "_created": "2026-10-15T09:38:12.000Z",
  "_published": "2026-10-15T09:43:27.815Z",
  "_buildurl": "https://github.com/r-universe/geethanjaleem/actions/runs/38713904076",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 116353618947,
      "time": 135,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11962346530"
    },
    {
      "job": 116353618868,
      "time": 147,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11962071394"
    },
    {
      "job": 116353619053,
      "time": 229,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11962960537"
    },
    {
      "job": 116353619031,
      "time": 167,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11962466332"
    },
    {
      "job": 116351900108,
      "time": 250,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11961946247"
    },
    {
      "job": 116353619058,
      "time": 121,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11961609888"
    },
    {
      "job": 116353618929,
      "time": 96,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11962326213"
    },
    {
      "job": 116353618883,
      "time": 93,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11961817406"
    },
    {
      "job": 116353618866,
      "time": 108,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11962665786"
    }
  ],
  "_upstream": "https://github.com/geethanjaleem/cureassess",
  "_commit": {
    "id": "1d37cf0148ce5e5131a07753499856bd24cbadd0",
    "author": "Durbadal <166731377+Durbadal0@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #2 from GeethanjaleeM/cran-submission-prep\n\nCran submission prep",
    "time": 1788378863
  },
  "_maintainer": {
    "name": "Geethanjalee Mudunkotuwa",
    "email": "geethanjaleem@gmail.com",
    "login": "geethanjaleem",
    "description": "",
    "uuid": 236889947
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "flexsurv",
      "role": "Imports"
    },
    {
      "package": "flexsurvcure",
      "role": "Imports"
    },
    {
      "package": "survminer",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "geethanjaleem",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-33",
      "n": 2
    },
    {
      "week": "2026-35",
      "n": 1
    },
    {
      "week": "2026-36",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "durbadal0",
      "count": 6,
      "uuid": 166731377
    }
  ],
  "_userbio": {
    "uuid": 236889947,
    "type": "user",
    "name": "GeethanjaleeM",
    "followers": 1
  },
  "_downloads": {
    "count": 465,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/cureAssess"
  },
  "_devurl": "https://github.com/geethanjaleem/cureassess",
  "_searchresults": 11,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/cureAssess.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/geethanjaleem/cureassess",
  "_realowner": "geethanjaleem",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-09-14"
    }
  ],
  "_exports": [
    "cure.appropriateness",
    "immune.test",
    "model.fitting",
    "mz.test",
    "prepare.surv.data",
    "qn.test",
    "receus.method",
    "run.cure.tests",
    "shen.test"
  ],
  "_help": [
    {
      "page": "cure.appropriateness",
      "title": "Assess cure model appropriateness in two stages",
      "topics": [
        "cure.appropriateness"
      ]
    },
    {
      "page": "immune.test",
      "title": "Compute immune-related summary quantities",
      "topics": [
        "immune.test"
      ]
    },
    {
      "page": "model.fitting",
      "title": "Fit candidate cure and non-cure survival models",
      "topics": [
        "model.fitting"
      ]
    },
    {
      "page": "mz.test",
      "title": "Compute the Maller-Zhou test statistic",
      "topics": [
        "mz.test"
      ]
    },
    {
      "page": "plot.cure.model.fit",
      "title": "Plot a fitted cure model object",
      "topics": [
        "plot.cure.model.fit"
      ]
    },
    {
      "page": "prepare.surv.data",
      "title": "Prepare survival data for cure model assessment",
      "topics": [
        "prepare.surv.data"
      ]
    },
    {
      "page": "print.cure.appropriateness",
      "title": "Print cure model appropriateness analysis results",
      "topics": [
        "print.cure.appropriateness"
      ]
    },
    {
      "page": "print.cure.model.fit",
      "title": "Print a fitted cure model object",
      "topics": [
        "print.cure.model.fit"
      ]
    },
    {
      "page": "print.cure.test.result",
      "title": "Print cure model test results",
      "topics": [
        "print.cure.test.result"
      ]
    },
    {
      "page": "print.immune.test.result",
      "title": "Print immune test results",
      "topics": [
        "print.immune.test.result"
      ]
    },
    {
      "page": "print.receus.output",
      "title": "Print RECeUS cure model assessment results",
      "topics": [
        "print.receus.output"
      ]
    },
    {
      "page": "print.summary.cure.appropriateness",
      "title": "Print a summary of cure model appropriateness results",
      "topics": [
        "print.summary.cure.appropriateness"
      ]
    },
    {
      "page": "qn.test",
      "title": "Compute the qn statistic",
      "topics": [
        "qn.test"
      ]
    },
    {
      "page": "receus.method",
      "title": "Compute RECeUS cure model diagnostic outputs",
      "topics": [
        "receus.method"
      ]
    },
    {
      "page": "run.cure.tests",
      "title": "Run cure model appropriateness diagnostics",
      "topics": [
        "run.cure.tests"
      ]
    },
    {
      "page": "shen.test",
      "title": "Compute Shen's test statistic",
      "topics": [
        "shen.test"
      ]
    },
    {
      "page": "summary.cure.appropriateness",
      "title": "Summarize cure model appropriateness results",
      "topics": [
        "summary.cure.appropriateness"
      ]
    },
    {
      "page": "summary.cure.model.fit",
      "title": "Summarize a fitted cure model object",
      "topics": [
        "summary.cure.model.fit"
      ]
    }
  ],
  "_readme": "https://github.com/geethanjaleem/cureassess/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "assertthat",
    "backports",
    "bbmle",
    "bdsmatrix",
    "boot",
    "broom",
    "car",
    "carData",
    "cli",
    "colorspace",
    "commonmark",
    "corrplot",
    "cowplot",
    "cpp11",
    "curl",
    "data.table",
    "Deriv",
    "deSolve",
    "doBy",
    "dplyr",
    "exactRankTests",
    "farver",
    "fastGHQuad",
    "flexsurv",
    "flexsurvcure",
    "forecast",
    "Formula",
    "fracdiff",
    "generics",
    "ggplot2",
    "ggpubr",
    "ggrepel",
    "ggsci",
    "ggsignif",
    "ggtext",
    "glue",
    "gridExtra",
    "gridtext",
    "gtable",
    "isoband",
    "jpeg",
    "labeling",
    "lattice",
    "lifecycle",
    "litedown",
    "lme4",
    "lmtest",
    "lsoda",
    "magrittr",
    "markdown",
    "MASS",
    "Matrix",
    "MatrixModels",
    "maxstat",
    "mgcv",
    "minqa",
    "modelr",
    "mstate",
    "muhaz",
    "mvtnorm",
    "nlme",
    "nloptr",
    "nnet",
    "numDeriv",
    "pbkrtest",
    "pillar",
    "pkgconfig",
    "png",
    "polynom",
    "purrr",
    "quadprog",
    "quantreg",
    "R6",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "rlang",
    "rstatix",
    "rstpm2",
    "S7",
    "scales",
    "SparseM",
    "statmod",
    "stringi",
    "stringr",
    "survival",
    "survminer",
    "tibble",
    "tidyr",
    "tidyselect",
    "timeDate",
    "urca",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xml2",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "introduction.Rmd",
      "filename": "introduction.html",
      "title": "Introduction to cureAssess",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Example 1: nwtco data set — an example where a cure model may be appropriate",
        "Step 1: Data preprocessing and risk-group creation",
        "Step 2: Prepare the survival data",
        "Step 3: Fit candidate cure and non-cure models including KM curve",
        "Display the Kaplan-Meier curve",
        "Step 4: Run cure-appropriateness tests",
        "1. Maller-Zhou test",
        "2. qn statistic",
        "3. Shen test",
        "4. Test for Immunes",
        "5. RECeUS method",
        "Step 5: Run the full wrapper",
        "Example 2: gbsg data set — an example where a cure model may not be appropriate.",
        "Recommended workflow"
      ],
      "created": "2026-08-13 21:28:40",
      "modified": "2026-08-25 15:03:48",
      "commits": 2
    }
  ],
  "_score": 4.217483944213907,
  "_indexed": true,
  "_nocasepkg": "cureassess",
  "_universes": [
    "geethanjaleem"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-15T09:40:36.000Z",
      "distro": "resolute",
      "commit": "1d37cf0148ce5e5131a07753499856bd24cbadd0",
      "fileid": "https://r2.ropensci.org/5abe85fb563f1f237282e669ab338e69c9baca76ed34d3bb827420593bf6edd6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/geethanjaleem/actions/runs/38713904076"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-15T09:40:42.000Z",
      "distro": "resolute",
      "commit": "1d37cf0148ce5e5131a07753499856bd24cbadd0",
      "fileid": "https://r2.ropensci.org/0d75a166b5bf18d61ae8444282043cccab0daa694811749da7a8b1a4e204f42b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/geethanjaleem/actions/runs/38713904076"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-15T09:41:51.000Z",
      "commit": "1d37cf0148ce5e5131a07753499856bd24cbadd0",
      "fileid": "https://r2.ropensci.org/4b9a149440bac846d46bb3c8ae1c845d310e500927e9e311c4bde8c6bfe430d9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/geethanjaleem/actions/runs/38713904076"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-15T09:41:05.000Z",
      "commit": "1d37cf0148ce5e5131a07753499856bd24cbadd0",
      "fileid": "https://r2.ropensci.org/73871c476c6f3a36a0b50c2091f0d3458220dc8036e02f7e936d134564a2ae76",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/geethanjaleem/actions/runs/38713904076"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-10-15T09:40:40.000Z",
      "commit": "1d37cf0148ce5e5131a07753499856bd24cbadd0",
      "fileid": "https://r2.ropensci.org/5e8af420ba5a68af1a97180853f42ac1859fa16c4b479cc28f2a7ed15394d32c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/geethanjaleem/actions/runs/38713904076"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-15T09:39:39.000Z",
      "commit": "1d37cf0148ce5e5131a07753499856bd24cbadd0",
      "fileid": "https://r2.ropensci.org/4c91fbcb45858d5c9bab73aba6faad639da14c1f797f85c77098c023294e87ed",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/geethanjaleem/actions/runs/38713904076"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-15T09:39:39.000Z",
      "commit": "1d37cf0148ce5e5131a07753499856bd24cbadd0",
      "fileid": "https://r2.ropensci.org/a511f4880788e99101dbee278f7716889d1fe5bb0754f43e73f8fc222ce19044",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/geethanjaleem/actions/runs/38713904076"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-15T09:39:55.000Z",
      "commit": "1d37cf0148ce5e5131a07753499856bd24cbadd0",
      "fileid": "https://r2.ropensci.org/432c2c3457b5fb22d432aa4330db2bf357d989b426d8e4a0ebc83bda6eb443b6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/geethanjaleem/actions/runs/38713904076"
    }
  ]
}